Alternatively, serum-induced hepatic differentiation was performed as described.22 For reverse-transcription polymerase chain reaction (RT-PCR), total RNA was extracted using RNeasy mini-kits and then treated with RNase free DNase (Qiagen, Valencia, CA). One microgram of total RNA was then reverse-transcribed to complementary DNA using a Superscript RT kit (Invitrogen,
Carlsbad, CA) with random hexamers. PCR was performed using Taq polymerase (Takara Bio, Shiga, Japan) in PCR buffer containing 2.5 mM MgCl2 and 0.2 μM dNTPs. Oligonucleotide primers were performed ACP-196 concentration using the primer pairs shown in Supporting Table 1. For real-time PCR, commercially available assay mixes for Alb, Afp, carbamoyl phosphate synthetase (Cps1), transcription factor 1 (Tcf1), Hex, BMP-4, Delta-like 1 (Dlk1), and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) were used to quantify messenger RNA (mRNA) levels, and PCR was performed using a Prism 7700 Sequence Detector (Applied Biosystems, Foster City, CA). mRNA levels were normalized to GAPDH mRNA levels in the same samples. EBs-derived cells were stained with a PE-conjugated anti-c-kit antibody (BD PharMingen, San Diego, CA), after which the cells were analyzed using a FACSan (Becton Dickenson, San Jose, CA) or sorted on a FACS Aria cell sorter (Becton Dickenson). Foxa2 staining of brachyury+ and c-kit+ cells was performed in microtiter wells as described.22
Briefly, the cells were incubated with an anti-Foxa2 Palbociclib manufacturer primary antibody
(goat polyclonal P-19; Santa Cruz Biotechnololgy, Santa Cruz, CA) and visualized using Cy3-conjugated anti-goat secondary immunoglobulin G antibody (Jackson Immunoresearch, West Grove, PA). For Alb staining, day 14 EBs were scraped, embedded in Tissue Tek O.C.T. compound (Sakura, Torrance, CA), and frozen in liquid nitrogen, after which 4-μm-thick sections were cut on a cryostat and placed on polylysine-coated glass microscope slides. After the fixation and permeabilization, the cells were incubated for 1 hour with anti-Alb primary antibody (Biogenesis, Kingston, NH) and visualized using a Cy3-conjugated anti-rabbit immunoglobulin G secondary antibody (Jackson Immunoresearch). After culturing EBs for 14 days under various conditions, the medium was changed to serum-free Iscove’s modified Dulbecco’s medium containing 2 mM glutamine. The EBs were then incubated for Fludarabine an additional 24 hours, and the conditioned medium was collected for assay. Alb and transferrin concentrations in the conditioned medium were measured using solid-phase sandwich enzyme-linked immunosorbent assays (Bethyl, Montgomery, TX) according the manufacturer’s instructions. For microarray analysis, total RNA was extracted using RNeasy mini kits (Qiagen), after which 10 μg of fragmented target total RNA was used for hybridization of each UniSet Mouse I Expression Bioarray chip (Amersham Life Sciences, Buckinghamshire, UK), which contained 10,012 probes.